diff --git a/SConstruct b/SConstruct
index 52fef2f3b87..7cdc4b35206 100644
--- a/SConstruct
+++ b/SConstruct
@@ -871,19 +871,21 @@ B.init_lib_dict()
 
 ##### END SETUP ##########
 
-if B.targets != ['cudakernels']:
-    # Put all auto configuration run-time tests here
+## Auto-configuration run-time tests
 
-    from FindSharedPtr import FindSharedPtr
-    from FindUnorderedMap import FindUnorderedMap
+from FindSharedPtr import FindSharedPtr
+from FindUnorderedMap import FindUnorderedMap
 
-    conf = Configure(env)
-    old_linkflags = conf.env['LINKFLAGS']
-    conf.env.Append(LINKFLAGS=env['PLATFORM_LINKFLAGS'])
-    FindSharedPtr(conf)
-    FindUnorderedMap(conf)
-    conf.env['LINKFLAGS'] = old_linkflags
-    env = conf.Finish()
+conf = Configure(env)
+old_linkflags = conf.env['LINKFLAGS']
+conf.env.Append(LINKFLAGS=env['PLATFORM_LINKFLAGS'])
+
+# Put all tests here
+FindSharedPtr(conf)
+FindUnorderedMap(conf)
+
+conf.env['LINKFLAGS'] = old_linkflags
+env = conf.Finish()
 
 # End of auto configuration